PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00003.1_g00017.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ARF
Protein Properties Length: 958aa    MW: 105943 Da    PI: 4.9046
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00003.1_g00017.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.41.5e-24175276199
                              EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                              f+k+lt sd++++g +++p++ ae+       ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v
  Sme2.5_00003.1_g00017.1 175 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDSV 259
                              99*********************999*****9555554.49********************************************* PP

                              EEEE-SSSEE..EEEEE-S CS
                       B3  81 vFkldgrsefelvvkvfrk 99 
                              +F   ++++ +l+++v+r+
  Sme2.5_00003.1_g00017.1 260 LFI--RDEKSQLLLGVRRA 276
                              ***..45677789999997 PP

2Auxin_resp116.91.7e-38301384183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              aahaa+++s+F+++YnPra++seFv++++k++k+++ +++svGmRf m+fete+s +rr++Gt++g+ dldp+rWp+SkWr+L+
  Sme2.5_00003.1_g00017.1 301 AAHAAANRSTFTIFYNPRACPSEFVIPLAKYRKSVYsTQLSVGMRFGMMFETEESGKRRYMGTISGIGDLDPLRWPGSKWRCLQ 384
                              79*********************************989*********************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.18E-46162304IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-42168289IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-22174275No hitNo description
PROSITE profilePS5086313.211175277IPR003340B3 DNA binding domain
PfamPF023625.6E-22175276IPR003340B3 DNA binding domain
SMARTSM010192.7E-24175277IPR003340B3 DNA binding domain
PfamPF065076.8E-34301384IPR010525Auxin response factor
PfamPF023091.6E-8839931IPR033389AUX/IAA domain
PROSITE profilePS5174525.756845929IPR000270PB1 domain
SuperFamilySSF542779.81E-9864924No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 958 aa     Download sequence    Send to blast
MGFREDKMYD GFFGFVFGVE VKEITEVFMG SVEVKNKPGS LVSGAHTLLE EMKLLKEMQD  60
HTGGGRKLIS SELWHACAGP LVTLPQVGSL VYYFPQGHSE QVAVSTNRTA TSQIPNYPNL  120
ASQLLCQVHN VTLHADKETD EIYAQMSLQP VNSEKDVFPI PDFGLKPNKH PTEFFCKTLT  180
ASDTSTHGGF SVPRRAAEKL FPPLDYSMQP PTQELVVRDL HDNTWTFRHI YRGQPKRHLL  240
TTGWSMFVGA KRLRAGDSVL FIRDEKSQLL LGVRRANRQQ ASLPSSVLSA DSMHIGVLAA  300
AAHAAANRST FTIFYNPRAC PSEFVIPLAK YRKSVYSTQL SVGMRFGMMF ETEESGKRRY  360
MGTISGIGDL DPLRWPGSKW RCLQVEWDEP GCGDKQNRVS PWEVETPESL FIFPSLTAGL  420
KRPYQSTFLG AQTEWDSLMQ HRPFMLVPEN VYGDLQSSSI SNLWSEQLMK MLMRPPSGVT  480
GLQCGVPTVQ DIKTALPQEA RNDIQPAGSQ KPELTTVEST PAQSETNSEV ILNQPAGVVN  540
SISSQQATLP LKSQPPEKVE TDTVGKSSEP RKETSNASVK LDQFQCNEDK VTTKPASPHE  600
LPTDASATAS QHNSFSQLQA SPWLIPHNPQ IDSAGSNNLL QCSTNNEWNL SPLQSAAGIL  660
RYPVSTSTLT KHDNSYMLPD TIGAALAPMG QDMWDHQLND VKCFSQTNLQ VPLDMTNMQF  720
LPDSYGFKDL SEESHNQSDI YSCLNFDSNS GSTVIDNSVS STVLDEFCTL KPTDFQNPSD  780
FLLGNISSSQ DVQSQITSAS LADSQNFSVQ EFADNSGGAS SSNVNFDECN LLQNSSWQQV  840
APRVRTYTKI QKAGSVGRSI DVSGFKNYEE LCFEIERMFG LEGLLNDTRG SGWKLVYVDF  900
ENDVLLVGDD PWEEFVGCVR CIRILSPTEV QQMGEEGMQL LNSAGLQGIN GSTSEFPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.04740932392Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1952480.0HM195248.1 Solanum lycopersicum auxin response factor 5 (ARF5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074004.10.0PREDICTED: auxin response factor 5
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLK4BVK30.0K4BVK3_SOLLC; Auxin response factor
STRINGSolyc04g081240.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58592334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein